J3_9N2C_009
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9N2C|1|16|A|975, 9N2C|1|16|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2C_009 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.058
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2C|1|16|U|955
9N2C|1|16|U|956
9N2C|1|16|U|957
9N2C|1|16|A|958
9N2C|1|16|A|959
9N2C|1|16|U|960
9N2C|1|16|U|961
9N2C|1|16|C|962
*
9N2C|1|16|G|973
9N2C|1|16|A|974
9N2C|1|16|A|975
9N2C|1|16|G|976
9N2C|1|16|A|977
9N2C|1|16|A|978
9N2C|1|16|C|979
9N2C|1|16|C|980
9N2C|1|16|U|981
9N2C|1|16|U|982
9N2C|1|16|A|983
9N2C|1|16|C|984
*
9N2C|1|16|G|1221
9N2C|1|16|G|1222
9N2C|1|16|C|1223
9N2C|1|16|U|1224
9N2C|1|16|A|1225
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain SJ
- 30S ribosomal protein S10
- Chain SM
- 30S ribosomal protein S13
- Chain SN
- 30S ribosomal protein S14
- Chain SS
- 30S ribosomal protein S19
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