J3_9N2C_019
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9N2C|1|23|A|504, 9N2C|1|23|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2C_019 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0983
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9N2C|1|23|G|30
9N2C|1|23|C|31
*
9N2C|1|23|G|474
9N2C|1|23|C|475
9N2C|1|23|G|476
9N2C|1|23|A|477
9N2C|1|23|A|478
9N2C|1|23|A|479
9N2C|1|23|A|480
9N2C|1|23|G|481
9N2C|1|23|A|482
9N2C|1|23|A|483
9N2C|1|23|C|484
*
9N2C|1|23|G|496
9N2C|1|23|A|497
9N2C|1|23|G|498
9N2C|1|23|U|499
9N2C|1|23|G|500
9N2C|1|23|A|501
9N2C|1|23|A|502
9N2C|1|23|A|503
9N2C|1|23|A|504
9N2C|1|23|A|505
9N2C|1|23|G|506
9N2C|1|23|A|507
9N2C|1|23|A|508
9N2C|1|23|C|509
9N2C|1|23|C|510
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LT
- 50S ribosomal protein L20
- Chain LV
- Large ribosomal subunit protein uL22
- Chain LX
- 50S ribosomal protein L24
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