J3_9N6Z_001

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

UGA*UAAUA*UA

Length

10 nucleotides

Bulged bases

9N6Z|1|L1|U|864

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N6Z_001 not in the Motif Atlas

Geometric match to J3_9H3G_030

Geometric discrepancy: 0.1853

The information below is about J3_9H3G_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9N6Z|1|L1|U|633
9N6Z|1|L1|G|634
9N6Z|1|L1|A|635
*
9N6Z|1|L1|U|861
9N6Z|1|L1|A|862
9N6Z|1|L1|A|863
9N6Z|1|L1|U|864
9N6Z|1|L1|A|865
*
9N6Z|1|L1|U|965
9N6Z|1|L1|A|966

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LE

40S ribosomal protein S22-A

Chain NE

Protein FAF1

Chain NF

40S ribosomal protein S13

Chain NQ

40S ribosomal protein S27-A