J3_9N72_008

3D structure

PDB id

9N72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State F

Experimental method

ELECTRON MICROSCOPY

Resolution

5.94 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

9N72|1|L1|U|1473, 9N72|1|L1|G|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N72|1|L1|C|1470
9N72|1|L1|A|1471
9N72|1|L1|C|1472
9N72|1|L1|U|1473
9N72|1|L1|G|1474
*
9N72|1|L1|C|1533
9N72|1|L1|G|1534
9N72|1|L1|U|1535
9N72|1|L1|G|1536
9N72|1|L1|C|1537
9N72|1|L1|U|1538
9N72|1|L1|G|1539
9N72|1|L1|G|1540
*
9N72|1|L1|C|1571
9N72|1|L1|G|1572
9N72|1|L1|A|1573
9N72|1|L1|G|1574

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S18-A

Chain L5

40S ribosomal protein S5

Chain LJ

U3 small nucleolar RNA-associated protein 15

Chain NP

40S ribosomal protein S19-A

Chain SK

Ribosomal RNA small subunit methyltransferase NEP1