J3_9N78_003
3D structure
- PDB id
- 9N78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State L
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.17 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9N78|1|L1|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N78_003 not in the Motif Atlas
- Homologous match to J3_9PN5_031
- Geometric discrepancy: 0.0921
- The information below is about J3_9PN5_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.8
- Basepair signature
- cWW-F-cWW-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9N78|1|L1|U|633
9N78|1|L1|G|634
9N78|1|L1|A|635
*
9N78|1|L1|U|861
9N78|1|L1|A|862
9N78|1|L1|A|863
9N78|1|L1|U|864
9N78|1|L1|A|865
9N78|1|L1|G|866
*
9N78|1|L1|C|962
9N78|1|L1|A|963
9N78|1|L1|U|964
9N78|1|L1|U|965
9N78|1|L1|A|966
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LD
- 40S ribosomal protein S11-A
- Chain LE
- 40S ribosomal protein S22-A
- Chain NF
- 40S ribosomal protein S13
- Chain NQ
- 40S ribosomal protein S27-A
- Chain SR
- 40S ribosomal protein S23-A
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