J3_9N78_008

3D structure

PDB id

9N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State L

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N78_008 not in the Motif Atlas

Homologous match to J3_9PN5_036

Geometric discrepancy: 0.1938

The information below is about J3_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9N78|1|L1|U|1168
9N78|1|L1|G|1169
9N78|1|L1|G|1170
9N78|1|L1|A|1171
*
9N78|1|L1|U|1468
9N78|1|L1|A|1469
9N78|1|L1|C|1470
*
9N78|1|L1|G|1574
9N78|1|L1|G|1575
9N78|1|L1|A|1576
9N78|1|L1|A|1577

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L5

40S ribosomal protein S5

Chain NP

40S ribosomal protein S19-A

Chain SK

Ribosomal RNA small subunit methyltransferase NEP1

Chain SM

U3 small nucleolar ribonucleoprotein protein IMP4