J3_9N79_010
3D structure
- PDB id
- 9N79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State M
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.93 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9N79|1|L1|U|1473, 9N79|1|L1|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N79_010 not in the Motif Atlas
- Homologous match to J3_9PN5_043
- Geometric discrepancy: 0.1191
- The information below is about J3_9PN5_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.4
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 7
Unit IDs
9N79|1|L1|C|1470
9N79|1|L1|A|1471
9N79|1|L1|C|1472
9N79|1|L1|U|1473
9N79|1|L1|G|1474
*
9N79|1|L1|C|1533
9N79|1|L1|G|1534
9N79|1|L1|U|1535
9N79|1|L1|G|1536
9N79|1|L1|C|1537
9N79|1|L1|U|1538
9N79|1|L1|G|1539
9N79|1|L1|G|1540
*
9N79|1|L1|C|1571
9N79|1|L1|G|1572
9N79|1|L1|A|1573
9N79|1|L1|G|1574
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L3
- 40S ribosomal protein S18-A
- Chain L5
- 40S ribosomal protein S5
- Chain NP
- 40S ribosomal protein S19-A
- Chain NW
- 40S ribosomal protein S25-A
- Chain SK
- Ribosomal RNA small subunit methyltransferase NEP1
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