J3_9N9J_002

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9N9J|1|L5|A|218, 9N9J|1|L5|G|219, 9N9J|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|C|196
9N9J|1|L5|A|197
9N9J|1|L5|A|198
9N9J|1|L5|G|199
*
9N9J|1|L5|C|215
9N9J|1|L5|C|216
9N9J|1|L5|C|217
9N9J|1|L5|A|218
9N9J|1|L5|G|219
9N9J|1|L5|C|220
9N9J|1|L5|C|221
9N9J|1|L5|C|222
9N9J|1|L5|G|223
9N9J|1|L5|U|224
9N9J|1|L5|G|225
9N9J|1|L5|G|226
9N9J|1|L5|A|227
9N9J|1|L5|C|228
*
9N9J|1|L5|G|240
9N9J|1|L5|G|241
9N9J|1|L5|U|242
9N9J|1|L5|A|243
9N9J|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain O2

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1