J3_9N9J_003

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

9N9J|1|L5|U|354, 9N9J|1|L5|A|362, 9N9J|1|L8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N9J_003 not in the Motif Atlas

Homologous match to J3_9PN5_004

Geometric discrepancy: 0.0758

The information below is about J3_9PN5_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.4

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

12

Unit IDs

9N9J|1|L5|C|351
9N9J|1|L5|G|352
9N9J|1|L5|A|353
9N9J|1|L5|U|354
9N9J|1|L5|A|355
9N9J|1|L5|G|356
9N9J|1|L5|U|357
9N9J|1|L5|C|358
9N9J|1|L5|A|359
9N9J|1|L5|A|360
9N9J|1|L5|C|361
9N9J|1|L5|A|362
9N9J|1|L5|A|363
9N9J|1|L5|G|364
9N9J|1|L5|U|365
9N9J|1|L5|A|366
9N9J|1|L5|C|367
*
9N9J|1|L5|G|374
9N9J|1|L5|G|375
9N9J|1|L5|A|376
9N9J|1|L5|A|377
9N9J|1|L5|A|378
9N9J|1|L5|G|379
*
9N9J|1|L8|C|21
9N9J|1|L8|U|22
9N9J|1|L8|C|23
9N9J|1|L8|G|24

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39

Chain y3

Endoplasmin