J3_9N9J_005

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9N9J|1|L5|C|704, 9N9J|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|C|451
9N9J|1|L5|A|452
9N9J|1|L5|G|453
9N9J|1|L5|U|454
9N9J|1|L5|C|455
*
9N9J|1|L5|G|701
9N9J|1|L5|U|702
9N9J|1|L5|G|703
9N9J|1|L5|C|704
9N9J|1|L5|G|705
*
9N9J|1|L5|C|1292
9N9J|1|L5|G|1293
9N9J|1|L5|A|1294
9N9J|1|L5|C|1295
9N9J|1|L5|G|1296

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33

Chain Lr

60S ribosomal protein L28