J3_9N9J_022

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9N9J|1|L5|U|4989, 9N9J|1|L5|C|4990, 9N9J|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|C|4970
9N9J|1|L5|A|4971
9N9J|1|L5|U|4972
*
9N9J|1|L5|G|4986
9N9J|1|L5|C|4987
9N9J|1|L5|U|4988
9N9J|1|L5|U|4989
9N9J|1|L5|C|4990
9N9J|1|L5|U|4991
*
9N9J|1|L5|A|5060
9N9J|1|L5|A|5061
9N9J|1|L5|G|5062
9N9J|1|L5|G|5063

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

Large ribosomal subunit protein uL22

Chain Ld

Large ribosomal subunit protein eL31