J3_9NDP_002

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9NDP|1|5|C|216, 9NDP|1|5|C|217, 9NDP|1|5|A|218, 9NDP|1|5|G|219, 9NDP|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|196
9NDP|1|5|A|197
9NDP|1|5|A|198
9NDP|1|5|G|199
*
9NDP|1|5|C|215
9NDP|1|5|C|216
9NDP|1|5|C|217
9NDP|1|5|A|218
9NDP|1|5|G|219
9NDP|1|5|C|220
9NDP|1|5|C|221
9NDP|1|5|C|222
9NDP|1|5|G|223
9NDP|1|5|U|224
9NDP|1|5|G|225
9NDP|1|5|G|226
9NDP|1|5|A|227
9NDP|1|5|C|228
*
9NDP|1|5|G|240
9NDP|1|5|G|241
9NDP|1|5|U|242
9NDP|1|5|A|243
9NDP|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24