J3_9NDP_009

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9NDP|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|G|1545
9NDP|1|5|C|1546
9NDP|1|5|A|1547
9NDP|1|5|G|1548
*
9NDP|1|5|C|1580
9NDP|1|5|G|1581
9NDP|1|5|U|1582
9NDP|1|5|A|1583
9NDP|1|5|G|1584
*
9NDP|1|5|U|1609
9NDP|1|5|C|1610
9NDP|1|5|C|1611
9NDP|1|5|G|1612
9NDP|1|5|A|1613
9NDP|1|5|C|1614

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34

Chain p

eL43