J3_9NDP_010

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9NDP|1|5|A|1805, 9NDP|1|5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|U|1726
9NDP|1|5|U|1727
*
9NDP|1|5|A|1802
9NDP|1|5|G|1803
9NDP|1|5|A|1804
9NDP|1|5|A|1805
9NDP|1|5|G|1806
*
9NDP|1|5|C|1832
9NDP|1|5|G|1833
9NDP|1|5|U|1834
9NDP|1|5|G|1835
9NDP|1|5|G|1836
9NDP|1|5|A|1837

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL30

Chain T

eL21

Chain b

Large ribosomal subunit protein eL29