J3_9NDP_014

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|U|2440
9NDP|1|5|C|2441
9NDP|1|5|G|2442
9NDP|1|5|G|2443
9NDP|1|5|U|2444
9NDP|1|5|C|2445
*
9NDP|1|5|G|2515
9NDP|1|5|G|2516
9NDP|1|5|A|2517
9NDP|1|5|G|2518
9NDP|1|5|U|2519
*
9NDP|1|5|A|2536
9NDP|1|5|A|2537

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

eL23

Chain g

60S ribosomal protein L34

Chain k

Large ribosomal subunit protein eL38

Chain l

eL39