J3_9NDP_016

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|A|2598
9NDP|1|5|G|2599
9NDP|1|5|A|2600
9NDP|1|5|A|2601
9NDP|1|5|G|2602
*
9NDP|1|5|C|2737
9NDP|1|5|C|2738
*
9NDP|1|5|G|2742
9NDP|1|5|A|2743
9NDP|1|5|A|2744
9NDP|1|5|A|2745
9NDP|1|5|A|2746
9NDP|1|5|U|2747

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain p

eL43