J3_9NDP_019
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9NDP|1|5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NDP_019 not in the Motif Atlas
- Homologous match to J3_8GLP_034
- Geometric discrepancy: 0.0714
- The information below is about J3_8GLP_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9NDP|1|5|G|4228
9NDP|1|5|U|4229
9NDP|1|5|C|4230
*
9NDP|1|5|G|4331
9NDP|1|5|C|4332
9NDP|1|5|C|4333
9NDP|1|5|U|4334
9NDP|1|5|C|4335
9NDP|1|5|A|4336
9NDP|1|5|C|4337
9NDP|1|5|G|4338
9NDP|1|5|A|4339
9NDP|1|5|U|4340
9NDP|1|5|C|4341
9NDP|1|5|C|4342
*
9NDP|1|5|G|4370
9NDP|1|5|G|4371
9NDP|1|5|U|4372
9NDP|1|5|G|4373
9NDP|1|5|U|4374
9NDP|1|5|C|4375
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- Ribosomal protein L36a
Coloring options: