J3_9NDP_021
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9NDP|1|5|A|4464, 9NDP|1|5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NDP_021 not in the Motif Atlas
- Homologous match to J3_9PN5_022
- Geometric discrepancy: 0.1188
- The information below is about J3_9PN5_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.3
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9NDP|1|5|U|4463
9NDP|1|5|A|4464
9NDP|1|5|U|4465
9NDP|1|5|C|4466
*
9NDP|1|5|G|4491
9NDP|1|5|U|4492
9NDP|1|5|U|4493
*
9NDP|1|5|A|4507
9NDP|1|5|C|4508
9NDP|1|5|U|4509
9NDP|1|5|A|4510
9NDP|1|5|A|4511
9NDP|1|5|U|4512
9NDP|1|5|A|4513
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
Coloring options: