J3_9NDP_023

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9NDP|1|5|U|4989, 9NDP|1|5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|4970
9NDP|1|5|A|4971
9NDP|1|5|U|4972
*
9NDP|1|5|G|4986
9NDP|1|5|C|4987
9NDP|1|5|U|4988
9NDP|1|5|U|4989
9NDP|1|5|C|4990
9NDP|1|5|U|4991
*
9NDP|1|5|A|5060
9NDP|1|5|A|5061
9NDP|1|5|G|5062
9NDP|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain d

eL31