J3_9NDP_031

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9NDP|1|K|C|1138, 9NDP|1|K|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1094
9NDP|1|K|U|1095
9NDP|1|K|G|1096
*
9NDP|1|K|U|1136
9NDP|1|K|U|1137
9NDP|1|K|C|1138
9NDP|1|K|C|1139
9NDP|1|K|G|1140
*
9NDP|1|K|C|1147
9NDP|1|K|A|1148
9NDP|1|K|A|1149
9NDP|1|K|A|1150
9NDP|1|K|G|1151

Current chains

Chain K

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS21

Chain JJ

40S ribosomal protein S27

Chain LL

Small ribosomal subunit protein eS26

Chain TT

Ribosomal protein S15a

Chain q

uS2 (SA)