J3_9NDP_033

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NDP_033 not in the Motif Atlas

Homologous match to J3_9H3G_036

Geometric discrepancy: 0.1002

The information below is about J3_9H3G_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NDP|1|K|U|1225
9NDP|1|K|G|1226
9NDP|1|K|G|1227
9NDP|1|K|A|1228
*
9NDP|1|K|U|1530
9NDP|1|K|A|1531
9NDP|1|K|C|1532
*
9NDP|1|K|G|1638
9NDP|1|K|G|1639
9NDP|1|K|A|1640
9NDP|1|K|A|1641

Current chains

Chain K

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain II

uS13

Chain PP

eS19

Chain UU

uS9

Chain y

Ribosomal protein S5