J3_9NDP_034

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9NDP|1|K|G|1256, 9NDP|1|K|A|1258, 9NDP|1|K|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1237
9NDP|1|K|U|1238
9NDP|1|K|U|1239
9NDP|1|K|A|1240
9NDP|1|K|A|1241
9NDP|1|K|U|1242
9NDP|1|K|U|1243
9NDP|1|K|U|1244
*
9NDP|1|K|G|1255
9NDP|1|K|G|1256
9NDP|1|K|G|1257
9NDP|1|K|A|1258
9NDP|1|K|A|1259
9NDP|1|K|A|1260
9NDP|1|K|C|1261
9NDP|1|K|C|1262
9NDP|1|K|U|1263
9NDP|1|K|C|1264
9NDP|1|K|A|1265
9NDP|1|K|C|1266
*
9NDP|1|K|G|1516
9NDP|1|K|G|1517
9NDP|1|K|C|1518
9NDP|1|K|U|1519
9NDP|1|K|G|1520

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain II

uS13

Chain WW

uS19