J3_9NDP_035

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9NDP|1|K|G|1274, 9NDP|1|K|G|1507, 9NDP|1|K|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1272
9NDP|1|K|C|1273
9NDP|1|K|G|1274
9NDP|1|K|G|1275
9NDP|1|K|A|1276
9NDP|1|K|C|1277
*
9NDP|1|K|G|1320
9NDP|1|K|G|1321
9NDP|1|K|G|1322
9NDP|1|K|U|1323
9NDP|1|K|G|1324
*
9NDP|1|K|U|1504
9NDP|1|K|U|1505
9NDP|1|K|A|1506
9NDP|1|K|G|1507
9NDP|1|K|A|1508
9NDP|1|K|U|1509
9NDP|1|K|G|1510

Current chains

Chain K

18S rRNA

Nearby chains

Chain 0

Ribosomal protein S27a

Chain 9

eS29

Chain SS

S10_plectin domain-containing protein