J3_9NDP_037

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

9NDP|1|K|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|1350
9NDP|1|K|G|1351
*
9NDP|1|K|U|1360
9NDP|1|K|G|1361
9NDP|1|K|U|1362
9NDP|1|K|C|1363
*
9NDP|1|K|G|1375
9NDP|1|K|A|1376
9NDP|1|K|U|1377
9NDP|1|K|A|1378
9NDP|1|K|A|1379

Current chains

Chain K

18S rRNA

Nearby chains

Chain KK

eS17

Chain q

uS2 (SA)

Chain v

Small ribosomal subunit protein uS5