J3_9NDP_038

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

9NDP|1|K|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1391
9NDP|1|K|U|1392
9NDP|1|K|G|1393
9NDP|1|K|G|1394
9NDP|1|K|C|1395
*
9NDP|1|K|G|1450
9NDP|1|K|G|1451
9NDP|1|K|A|1452
9NDP|1|K|C|1453
9NDP|1|K|A|1454
9NDP|1|K|A|1455
9NDP|1|K|G|1456
*
9NDP|1|K|C|1470
9NDP|1|K|C|1471
9NDP|1|K|C|1472
9NDP|1|K|G|1473
9NDP|1|K|A|1474
9NDP|1|K|G|1475
9NDP|1|K|A|1476
9NDP|1|K|U|1477
9NDP|1|K|U|1478
9NDP|1|K|G|1479

Current chains

Chain K

18S rRNA

Nearby chains

Chain 6

RACK1

Chain 9

eS29

Chain FF

Ribosomal protein S28

Chain GG

uS10

Chain KK

eS17

Chain UU

uS9

Chain w

Ribosomal protein S3

Chain y

Ribosomal protein S5