J3_9NJF_002
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9NJF|1|R1|A|504, 9NJF|1|R1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_002 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.1192
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NJF|1|R1|G|30
9NJF|1|R1|C|31
*
9NJF|1|R1|G|474
9NJF|1|R1|C|475
9NJF|1|R1|G|476
9NJF|1|R1|A|477
9NJF|1|R1|A|478
9NJF|1|R1|A|479
9NJF|1|R1|A|480
9NJF|1|R1|G|481
9NJF|1|R1|A|482
9NJF|1|R1|A|483
9NJF|1|R1|C|484
*
9NJF|1|R1|G|496
9NJF|1|R1|A|497
9NJF|1|R1|G|498
9NJF|1|R1|U|499
9NJF|1|R1|G|500
9NJF|1|R1|A|501
9NJF|1|R1|A|502
9NJF|1|R1|A|503
9NJF|1|R1|A|504
9NJF|1|R1|A|505
9NJF|1|R1|G|506
9NJF|1|R1|A|507
9NJF|1|R1|A|508
9NJF|1|R1|C|509
9NJF|1|R1|C|510
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 24
- Large ribosomal subunit protein uL24
Coloring options: