J3_9NJF_003

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9NJF|1|R1|U|34, 9NJF|1|R1|U|448, 9NJF|1|R1|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_003 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1227

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|C|32
9NJF|1|R1|C|33
9NJF|1|R1|U|34
9NJF|1|R1|G|35
*
9NJF|1|R1|C|445
9NJF|1|R1|G|446
9NJF|1|R1|A|447
9NJF|1|R1|U|448
9NJF|1|R1|A|449
9NJF|1|R1|G|450
9NJF|1|R1|U|451
9NJF|1|R1|G|452
9NJF|1|R1|A|453
9NJF|1|R1|A|454
9NJF|1|R1|C|455
9NJF|1|R1|C|456
9NJF|1|R1|A|457
9NJF|1|R1|G|458
9NJF|1|R1|U|459
9NJF|1|R1|A|460
9NJF|1|R1|C|461
*
9NJF|1|R1|G|468
9NJF|1|R1|G|469
9NJF|1|R1|A|470
9NJF|1|R1|A|471
9NJF|1|R1|A|472
9NJF|1|R1|G|473

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 23

Large ribosomal subunit protein uL23

Chain 34

50S ribosomal protein L34

Chain 4

Large ribosomal subunit protein uL4