J3_9NJF_013

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9NJF|1|R1|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_013 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0657

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9NJF|1|R1|C|2091
9NJF|1|R1|U|2092
9NJF|1|R1|G|2093
*
9NJF|1|R1|C|2196
9NJF|1|R1|U|2197
9NJF|1|R1|A|2198
9NJF|1|R1|A|2199
9NJF|1|R1|C|2200
*
9NJF|1|R1|G|2223
9NJF|1|R1|G|2224
9NJF|1|R1|A|2225
9NJF|1|R1|C|2226
9NJF|1|R1|A|2227
9NJF|1|R1|G|2228

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9