J3_9NJF_018
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9NJF|1|R1|U|2833, 9NJF|1|R1|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_018 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1456
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9NJF|1|R1|G|2812
9NJF|1|R1|A|2813
9NJF|1|R1|A|2814
9NJF|1|R1|C|2815
*
9NJF|1|R1|G|2831
9NJF|1|R1|U|2832
9NJF|1|R1|U|2833
9NJF|1|R1|G|2834
9NJF|1|R1|A|2835
9NJF|1|R1|U|2836
*
9NJF|1|R1|A|2882
9NJF|1|R1|A|2883
9NJF|1|R1|U|2884
9NJF|1|R1|G|2885
9NJF|1|R1|A|2886
9NJF|1|R1|A|2887
9NJF|1|R1|C|2888
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 17
- Large ribosomal subunit protein bL17
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 3
- 50S ribosomal protein L3
- Chain 32
- 50S ribosomal protein L32
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