3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
9NJF|1|R1|U|2833, 9NJF|1|R1|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJF_018 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1456
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9NJF|1|R1|G|2812
9NJF|1|R1|A|2813
9NJF|1|R1|A|2814
9NJF|1|R1|C|2815
*
9NJF|1|R1|G|2831
9NJF|1|R1|U|2832
9NJF|1|R1|U|2833
9NJF|1|R1|G|2834
9NJF|1|R1|A|2835
9NJF|1|R1|U|2836
*
9NJF|1|R1|A|2882
9NJF|1|R1|A|2883
9NJF|1|R1|U|2884
9NJF|1|R1|G|2885
9NJF|1|R1|A|2886
9NJF|1|R1|A|2887
9NJF|1|R1|C|2888

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 17
Large ribosomal subunit protein bL17
Chain 22
Large ribosomal subunit protein uL22
Chain 3
50S ribosomal protein L3
Chain 32
50S ribosomal protein L32

Coloring options:


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