J3_9NJF_028
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9NJF|1|R3|A|975, 9NJF|1|R3|G|976, 9NJF|1|R3|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_028 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0925
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NJF|1|R3|U|955
9NJF|1|R3|U|956
9NJF|1|R3|U|957
9NJF|1|R3|A|958
9NJF|1|R3|A|959
9NJF|1|R3|U|960
9NJF|1|R3|U|961
9NJF|1|R3|C|962
*
9NJF|1|R3|G|973
9NJF|1|R3|A|974
9NJF|1|R3|A|975
9NJF|1|R3|G|976
9NJF|1|R3|A|977
9NJF|1|R3|A|978
9NJF|1|R3|C|979
9NJF|1|R3|C|980
9NJF|1|R3|U|981
9NJF|1|R3|U|982
9NJF|1|R3|A|983
9NJF|1|R3|C|984
*
9NJF|1|R3|G|1221
9NJF|1|R3|G|1222
9NJF|1|R3|C|1223
9NJF|1|R3|U|1224
9NJF|1|R3|A|1225
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sm
- 30S ribosomal protein S13
- Chain sn
- Small ribosomal subunit protein uS14
- Chain ss
- 30S ribosomal protein S19
Coloring options: