3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJF_032 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1033
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

9NJF|1|R3|C|1063
9NJF|1|R3|G|1064
9NJF|1|R3|U|1065
9NJF|1|R3|C|1066
9NJF|1|R3|A|1067
9NJF|1|R3|G|1068
*
9NJF|1|R3|C|1107
9NJF|1|R3|G|1108
9NJF|1|R3|C|1109
9NJF|1|R3|A|1110
9NJF|1|R3|A|1111
9NJF|1|R3|C|1112
9NJF|1|R3|C|1113
*
9NJF|1|R3|G|1187
9NJF|1|R3|A|1188
9NJF|1|R3|U|1189
9NJF|1|R3|G|1190
9NJF|1|R3|A|1191
9NJF|1|R3|C|1192
9NJF|1|R3|G|1193

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sc
Small ribosomal subunit protein uS3
Chain se
Small ribosomal subunit protein uS5
Chain si
Small ribosomal subunit protein uS9
Chain sj
30S ribosomal protein S10
Chain sn
Small ribosomal subunit protein uS14

Coloring options:


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