J3_9NJV_005

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUAG*CUGG*CAAA

Length

16 nucleotides

Bulged bases

9NJV|1|R1|U|686, 9NJV|1|R1|A|792, 9NJV|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|U|683
9NJV|1|R1|G|684
9NJV|1|R1|A|685
9NJV|1|R1|U|686
9NJV|1|R1|C|687
9NJV|1|R1|U|688
9NJV|1|R1|A|689
9NJV|1|R1|G|690
*
9NJV|1|R1|C|772
9NJV|1|R1|U|773
9NJV|1|R1|G|774
9NJV|1|R1|G|775
*
9NJV|1|R1|C|791
9NJV|1|R1|A|792
9NJV|1|R1|A|793
9NJV|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34