3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJV_006 not in the Motif Atlas
Homologous match to J3_5J7L_039
Geometric discrepancy: 0.0794
The information below is about J3_5J7L_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

9NJV|1|R1|C|698
9NJV|1|R1|A|699
9NJV|1|R1|G|700
*
9NJV|1|R1|C|732
9NJV|1|R1|G|733
9NJV|1|R1|A|734
9NJV|1|R1|A|735
9NJV|1|R1|C|736
*
9NJV|1|R1|G|760
9NJV|1|R1|A|761
9NJV|1|R1|U|762
9NJV|1|R1|G|763

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3326 s