J3_9NJV_009

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_009 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1417

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9NJV|1|R1|U|1344
9NJV|1|R1|C|1345
9NJV|1|R1|G|1346
9NJV|1|R1|A|1347
9NJV|1|R1|C|1348
9NJV|1|R1|C|1349
*
9NJV|1|R1|G|1382
9NJV|1|R1|A|1383
9NJV|1|R1|A|1384
9NJV|1|R1|A|1385
*
9NJV|1|R1|U|1402
9NJV|1|R1|A|1403

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23