J3_9NJV_012

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

9NJV|1|R1|A|2388, 9NJV|1|R1|U|2390, 9NJV|1|R1|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_012 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0856

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9NJV|1|R1|G|2282
9NJV|1|R1|C|2283
9NJV|1|R1|A|2284
*
9NJV|1|R1|U|2384
9NJV|1|R1|C|2385
9NJV|1|R1|A|2386
9NJV|1|R1|U|2387
9NJV|1|R1|A|2388
9NJV|1|R1|G|2389
9NJV|1|R1|U|2390
9NJV|1|R1|G|2391
9NJV|1|R1|A|2392
9NJV|1|R1|U|2393
9NJV|1|R1|C|2394
9NJV|1|R1|C|2395
*
9NJV|1|R1|G|2421
9NJV|1|R1|C|2422
9NJV|1|R1|U|2423
9NJV|1|R1|C|2424
9NJV|1|R1|A|2425
9NJV|1|R1|A|2426
9NJV|1|R1|C|2427

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 27

Large ribosomal subunit protein bL27

Chain 35

Large ribosomal subunit protein bL35