J3_9NJV_017
3D structure
- PDB id
- 9NJV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex (bL33 absent)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9NJV|1|R2|G|13, 9NJV|1|R2|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJV_017 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1272
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9NJV|1|R2|G|10
9NJV|1|R2|C|11
9NJV|1|R2|C|12
9NJV|1|R2|G|13
9NJV|1|R2|U|14
9NJV|1|R2|A|15
9NJV|1|R2|G|16
*
9NJV|1|R2|C|68
9NJV|1|R2|G|69
9NJV|1|R2|C|70
*
9NJV|1|R2|G|106
9NJV|1|R2|G|107
9NJV|1|R2|A|108
9NJV|1|R2|A|109
9NJV|1|R2|C|110
Current chains
- Chain R2
- 5S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 25
- Large ribosomal subunit protein bL25
- Chain 27
- Large ribosomal subunit protein bL27
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: