J3_9NKL_011

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_011 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1047

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NKL|1|R1|G|1424
9NKL|1|R1|G|1425
9NKL|1|R1|G|1426
9NKL|1|R1|A|1427
9NKL|1|R1|C|1428
9NKL|1|R1|G|1429
*
9NKL|1|R1|C|1564
9NKL|1|R1|C|1565
*
9NKL|1|R1|G|1568
9NKL|1|R1|A|1569
9NKL|1|R1|A|1570
9NKL|1|R1|A|1571
9NKL|1|R1|A|1572
9NKL|1|R1|G|1573
9NKL|1|R1|C|1574

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2