J3_9NKL_012

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9NKL|1|R1|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_012 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.088

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9NKL|1|R1|C|2091
9NKL|1|R1|U|2092
9NKL|1|R1|G|2093
*
9NKL|1|R1|C|2196
9NKL|1|R1|U|2197
9NKL|1|R1|A|2198
9NKL|1|R1|A|2199
9NKL|1|R1|C|2200
*
9NKL|1|R1|G|2223
9NKL|1|R1|G|2224
9NKL|1|R1|A|2225
9NKL|1|R1|C|2226
9NKL|1|R1|A|2227
9NKL|1|R1|G|2228

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9