J3_9NL5_001

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL5_001 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0694

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9NL5|1|R1|G|30
9NL5|1|R1|C|31
*
9NL5|1|R1|G|474
9NL5|1|R1|C|475
9NL5|1|R1|G|476
9NL5|1|R1|A|477
9NL5|1|R1|A|478
9NL5|1|R1|A|479
9NL5|1|R1|A|480
9NL5|1|R1|G|481
*
9NL5|1|R1|C|509
9NL5|1|R1|C|510

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 24

Large ribosomal subunit protein uL24