J3_9NL5_033

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL5_033 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1222

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9NL5|1|R3|U|1073
9NL5|1|R3|G|1074
*
9NL5|1|R3|U|1083
9NL5|1|R3|G|1084
9NL5|1|R3|U|1085
9NL5|1|R3|U|1086
*
9NL5|1|R3|G|1099
9NL5|1|R3|C|1100
9NL5|1|R3|A|1101
9NL5|1|R3|A|1102

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain se

Small ribosomal subunit protein uS5

Chain su

Small ribosomal subunit protein bS21