J3_9NLB_032

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLB_032 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.3621

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9NLB|1|R3|U|1073
9NLB|1|R3|G|1074
*
9NLB|1|R3|U|1083
9NLB|1|R3|G|1084
9NLB|1|R3|U|1085
9NLB|1|R3|U|1086
9NLB|1|R3|G|1087
*
9NLB|1|R3|C|1098
9NLB|1|R3|G|1099
9NLB|1|R3|C|1100
9NLB|1|R3|A|1101
9NLB|1|R3|A|1102

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain se

Small ribosomal subunit protein uS5

Chain su

Small ribosomal subunit protein bS21