J3_9NLE_008

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLE_008 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3305

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9NLE|1|R1|G|1055
9NLE|1|R1|G|1056
9NLE|1|R1|A|1057
*
9NLE|1|R1|U|1081
9NLE|1|R1|U|1082
9NLE|1|R1|U|1083
9NLE|1|R1|A|1084
9NLE|1|R1|A|1085
9NLE|1|R1|A|1086
9NLE|1|R1|G|1087
*
9NLE|1|R1|C|1102
9NLE|1|R1|A|1103
9NLE|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36