J3_9NLE_012

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLE_012 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1045

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NLE|1|R1|G|1424
9NLE|1|R1|G|1425
9NLE|1|R1|G|1426
9NLE|1|R1|A|1427
9NLE|1|R1|C|1428
9NLE|1|R1|G|1429
*
9NLE|1|R1|C|1564
9NLE|1|R1|C|1565
*
9NLE|1|R1|G|1568
9NLE|1|R1|A|1569
9NLE|1|R1|A|1570
9NLE|1|R1|A|1571
9NLE|1|R1|A|1572
9NLE|1|R1|G|1573
9NLE|1|R1|C|1574

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2