J3_9NLE_034

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NLE|1|R3|U|1240, 9NLE|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLE_034 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.1853

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9NLE|1|R3|C|1237
9NLE|1|R3|A|1238
9NLE|1|R3|A|1239
9NLE|1|R3|U|1240
9NLE|1|R3|G|1241
*
9NLE|1|R3|C|1296
9NLE|1|R3|G|1297
9NLE|1|R3|U|1298
9NLE|1|R3|A|1299
9NLE|1|R3|G|1300
9NLE|1|R3|U|1301
9NLE|1|R3|C|1302
9NLE|1|R3|C|1303
*
9NLE|1|R3|G|1334
9NLE|1|R3|U|1335
9NLE|1|R3|C|1336
9NLE|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain E

Energy-dependent translational throttle protein EttA

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13