J3_9NLF_003
3D structure
- PDB id
- 9NLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9NLF|1|R1|U|34, 9NLF|1|R1|U|448, 9NLF|1|R1|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLF_003 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0803
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9NLF|1|R1|C|32
9NLF|1|R1|C|33
9NLF|1|R1|U|34
9NLF|1|R1|G|35
*
9NLF|1|R1|C|445
9NLF|1|R1|G|446
9NLF|1|R1|A|447
9NLF|1|R1|U|448
9NLF|1|R1|A|449
9NLF|1|R1|G|450
9NLF|1|R1|U|451
9NLF|1|R1|G|452
9NLF|1|R1|A|453
9NLF|1|R1|A|454
9NLF|1|R1|C|455
9NLF|1|R1|C|456
9NLF|1|R1|A|457
9NLF|1|R1|G|458
9NLF|1|R1|U|459
9NLF|1|R1|A|460
9NLF|1|R1|C|461
*
9NLF|1|R1|G|468
9NLF|1|R1|G|469
9NLF|1|R1|A|470
9NLF|1|R1|A|471
9NLF|1|R1|A|472
9NLF|1|R1|G|473
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 23
- Large ribosomal subunit protein uL23
- Chain 34
- 50S ribosomal protein L34
- Chain 4
- Large ribosomal subunit protein uL4
Coloring options: