J3_9NLF_023
3D structure
- PDB id
- 9NLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9NLF|1|R3|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLF_023 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1241
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NLF|1|R3|U|672
9NLF|1|R3|A|673
*
9NLF|1|R3|U|717
9NLF|1|R3|A|718
9NLF|1|R3|C|719
9NLF|1|R3|C|720
9NLF|1|R3|G|721
9NLF|1|R3|G|722
9NLF|1|R3|U|723
9NLF|1|R3|G|724
9NLF|1|R3|G|725
*
9NLF|1|R3|C|732
9NLF|1|R3|G|733
9NLF|1|R3|G|734
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sf
- 30S ribosomal protein S6, non-modified isoform
- Chain sk
- Small ribosomal subunit protein uS11
- Chain so
- Small ribosomal subunit protein uS15
- Chain sr
- 30S ribosomal protein S18
- Chain su
- Small ribosomal subunit protein bS21
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