J3_9NLF_028

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9NLF|1|R3|U|1212, 9NLF|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_028 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.1299

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9NLF|1|R3|C|990
9NLF|1|R3|U|991
9NLF|1|R3|U|992
9NLF|1|R3|G|993
*
9NLF|1|R3|C|1045
9NLF|1|R3|A|1046
9NLF|1|R3|G|1047
*
9NLF|1|R3|C|1210
9NLF|1|R3|U|1211
9NLF|1|R3|U|1212
9NLF|1|R3|A|1213
9NLF|1|R3|C|1214
9NLF|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14