J3_9NLF_035

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NLF|1|R3|U|1240, 9NLF|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_035 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2152

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9NLF|1|R3|C|1237
9NLF|1|R3|A|1238
9NLF|1|R3|A|1239
9NLF|1|R3|U|1240
9NLF|1|R3|G|1241
*
9NLF|1|R3|C|1296
9NLF|1|R3|G|1297
9NLF|1|R3|U|1298
9NLF|1|R3|A|1299
9NLF|1|R3|G|1300
9NLF|1|R3|U|1301
9NLF|1|R3|C|1302
9NLF|1|R3|C|1303
*
9NLF|1|R3|G|1334
9NLF|1|R3|U|1335
9NLF|1|R3|C|1336
9NLF|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain Y

Probable ATP-binding protein YbiT

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13