J3_9NLH_028

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NLH|1|R3|U|1212, 9NLH|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLH_028 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1494

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NLH|1|R3|C|990
9NLH|1|R3|U|991
9NLH|1|R3|U|992
9NLH|1|R3|G|993
9NLH|1|R3|A|994
9NLH|1|R3|C|995
9NLH|1|R3|A|996
9NLH|1|R3|U|997
*
9NLH|1|R3|A|1044
9NLH|1|R3|C|1045
9NLH|1|R3|A|1046
9NLH|1|R3|G|1047
*
9NLH|1|R3|C|1210
9NLH|1|R3|U|1211
9NLH|1|R3|U|1212
9NLH|1|R3|A|1213
9NLH|1|R3|C|1214
9NLH|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14