J3_9NLJ_021

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9NLJ|1|R3|C|48, 9NLJ|1|R3|A|50, 9NLJ|1|R3|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_021 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.094

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9NLJ|1|R3|G|46
9NLJ|1|R3|C|47
9NLJ|1|R3|C|48
9NLJ|1|R3|U|49
9NLJ|1|R3|A|50
9NLJ|1|R3|A|51
9NLJ|1|R3|C|52
*
9NLJ|1|R3|G|359
9NLJ|1|R3|G|360
9NLJ|1|R3|G|361
9NLJ|1|R3|G|362
9NLJ|1|R3|A|363
9NLJ|1|R3|A|364
9NLJ|1|R3|U|365
9NLJ|1|R3|A|366
9NLJ|1|R3|U|367
*
9NLJ|1|R3|A|393
9NLJ|1|R3|G|394
9NLJ|1|R3|C|395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16